Scaffold Ga0208975

Basic Information
Taxon OID	3300027659 Open in IMG/M
Scaffold ID	Ga0208975_1002773 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027659 Open in IMG/M

Scaffold ID

Ga0208975_1002773 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6841
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6841

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.701094	Long. (^o)	-82.854085	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.701094

Long. (^o)

-82.854085

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F083898	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208975_10027732	F001298	N/A	MSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYMERTQYSVRMPAVTAAWTLPDGSNGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTYKPGSAWITLVVIDDNQ
Ga0208975_10027734	F001055	N/A	MGTASIRHIVESTLATYLSTQTGLTTVTFLTGDNAATQTLPKAVVLCESAQAPGDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFVATGDAACYDVTIGSEDEGIDERSWATSFTFDLLAVFPA
Ga0208975_10027735	F001725	N/A	MAAISNGVTCLYGVAGTVTNLFVQSYSLSSSFNSEATVVDETGLTKTHRLDDRKSEITIEGICKTSTMPVLGVALSFTLNAQTAYPSGSASVSFAGTVTKVDEKGSNKGFTSVSITAIDYEGITP
Ga0208975_10027739	F083898	N/A	MTIQPGNGYNFVSSSQGISLDIDKPWTPPIGDAMVFAPEFVLGTTNLPEQLVYGEGVGGRPSPFECQIVSINGERFLQIGVGAIGYTAGPMPLIKAGAETRIMQAYANKVQICPSGTRTYGDLYPIYPYDDPSYSLTWWMEDGGGYQLADTNDPLTLYAFKWDVDVGVAPFSTSTVVNTGLPTLALIAASNSADTNKVAVDPGPSIFVQTMNVQKMTGYDSTSTGLAGDWGHCHTSWLNPVKLGYSYKAIATITASANTFAMVGGIERAGIPLVQNQVQHISLVGKASGGSAYISCGAGTSTIPFPVTDFWDAVSPVYSNELTLAECLNSIPGITFTIDGEPVTIGFTGNVEVSRTTEGSYYVTFCNELAGLNPPLLTFNTAGVTAYTYDFDITQFHTGNIDLTTPMQTGMVQLRNVSGADEATDPYNVNFASDWDQIVNKAECVACDGFTGDVTTAGMTNMTGASTIPVDYSIVGGCVNEPYGFDHPYKVYLMSSGGGSNVWAIVTGATNNVTPGNITSTITLGAGTYDVWIRHPYLSPNFPDATNFEWAIGATN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208975_1002773

Overview

Ecosystem & Geography

Associated Families

Sequences