NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1019334

Scaffold Ga0208975_1019334


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1019334 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2250
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084229Metagenome / Metatranscriptome112N
F097318Metagenome / Metatranscriptome104N
F097332Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10193341F097332GGAGMTRVEAQRKSNEDYMCGRISKEEWDFQFEELGNVRVWSKDGKIHQLKEEHERLRPDNRTT
Ga0208975_10193342F084229GGAMIEPNIAQKAVSFVKSAAAFVKAGMPIRNKEQIEERLIICNQCVHYDRTAFAGAGKCGVCGCNMELKLVMDTERCPLEHWE
Ga0208975_10193345F097318AGGVNTLEHYIQYKKLNATKVMNALQLNGIISDECIFPDDVRDSGQAVYWLEDHMGEIHRS
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