NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1020340

Scaffold Ga0208975_1020340


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1020340 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10203402F082694N/AMGTKSARQILEAAIASHLSAQTELAGVSIYTGDGADTNVLPKAIVLCDSARAPNDLPQGLGNYSCGTRITVFSSADDNTLAQHRARCAAVAGAMQDLTAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFGYDILVVVNPQP
Ga0208975_10203404F085382N/AMSIYDTFLPDFQSLLADIGVPATVGANLFLVGLSRPMNTPKFDSGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATIASGVPIAALGEGKKFTVNGQVLRIKGQSYKQTSAVIELECVDDNQ
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