NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1029564

Scaffold Ga0208975_1029564


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1029564 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002935Metagenome519Y
F007691Metagenome / Metatranscriptome346Y
F022197Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10295643F002935AGGALRERSKGYIGQIVDGKKLAVIANGIYNLQYSSEFSECTVDNLLFVTLEEKNVFGDNKYALVCTEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTADIADYVRVFGSRLDDNCSLWQSKMSVAEDTIVI
Ga0208975_10295644F022197AGGAMTTTEITENPEMYADYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIAKVMDDELSWDDAQWDIEENVFIPELGEWHTK
Ga0208975_10295645F007691AGGAGMTTINDLINEIYESNFSHLEFEENMGGEACDCHIHTTLNTIAH
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