NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208975_1058225

Scaffold Ga0208975_1058225


Overview

Basic Information
Taxon OID3300027659 Open in IMG/M
Scaffold IDGa0208975_1058225 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1173
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002301Metagenome / Metatranscriptome573Y
F010680Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0208975_10582251F002301GGAMNDYIDKYDLLVASLATEYHRKYPMVETLDIQQILWLWFVTHPLKYKEWSELDQKDRDKLIAKSLRNAAIKYCEKEKAKTVGYELIDIYYYDASVIEVFLPSIIAESYEIPTKIKDLNFKASKTESVTDGNNWLVLRSDIANAFYKLTEAKQNILRTRFSTESNEWNSIAKDLNTTVDGARMKVQRAINSLIRNLGGWRTYSDEDVQQAKENE
Ga0208975_10582252F010680N/ASTRIVIVHLTKDEVRVCTLLAVERWLTKFGSVDRPNYAMGKKTGALEPEINANIRANVAEWAVAKAYNLQWSVPWYPNELHKNRKDIPDVGNVEIRTVRTRDSIPFWKKDINKTIFGVKVLDEEYYSSVQIYGSFNANDYMRAEYTDTQIDGWRVPVSEIK
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