NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209736_1000701

Scaffold Ga0209736_1000701


Overview

Basic Information
Taxon OID3300027660 Open in IMG/M
Scaffold IDGa0209736_1000701 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10808
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010343Metagenome / Metatranscriptome305Y
F026083Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209736_100070112F010343GGAGMRRKLVWIERQNFQGYGCSECAWVFNPSGAPTGKSLDEMKQKYEERRDKDFAAHVCTEHPRPKNTKD
Ga0209736_10007017F026083AGGGGGVAVIKFKYAVPLGQTMAFESVYHRNLQLDLSEKQEVWNIPGAFFAWMFVDGEIAGESYGIPLASSNEFIEELPGISETEKEKAVCCFSNTILPAFQRKGYGSILKAHWLGLAAAKGFEVVYGHARPGGSQALNAKFGAVFLESLPDWFGSGEDYRRYRLILNATA
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