NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209736_1000946

Scaffold Ga0209736_1000946


Overview

Basic Information
Taxon OID3300027660 Open in IMG/M
Scaffold IDGa0209736_1000946 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9574
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026659Metagenome / Metatranscriptome197Y
F038838Metagenome / Metatranscriptome165Y
F062504Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209736_100094611F038838AGGMPEMNGHEFAVEMRRLSPQAPIIMLSGTVDVPKQALKLVDAVIAKDCLSSELLPVIARLHGGECYLSLI
Ga0209736_100094614F026659N/AVRCQPSAEVVTGRTVVLALHKNVGGCQFCSILRGMAEPKTERSNCRFTVQGSDGKPLLVVQLYQDTIPALKGASFGFDLLGGTRVEAAKKLAEMLNEHVLDMFVTTGGKSV
Ga0209736_10009468F062504GAGMYTISKVREDIILTCKNCNHTERVSQFNLSLGSQRTQAARAMQAHSRHEHNTGPLLELLPNKYEVLASAAVGRHAWIFDR
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