NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209736_1002150

Scaffold Ga0209736_1002150


Overview

Basic Information
Taxon OID3300027660 Open in IMG/M
Scaffold IDGa0209736_1002150 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6507
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003354Metagenome / Metatranscriptome492Y
F008209Metagenome / Metatranscriptome337Y
F031621Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209736_10021504F008209AGGAGVKHALLIVAAAVLFLNTLVIPTVAHADGGGVGGGCGNVLCKP
Ga0209736_10021505F003354GGAMTLKSALQDVKDTTLTAVSGLLGKLAYLASLRRAQGRYRHWGIELIHGPESCERALKVAHTEVVAGVLRAPLKSLLEDLDESSRGSGVAARSYIEGMREHLNELLPGERPESPAARHLNSVLLALSCLQKNRGRATRSIS
Ga0209736_10021509F031621N/AMSTDSKKSMGWTVVLIFLGMAALYGGSKWLSLLIPAGLLVWYTAKPMIGTGRN
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