NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209736_1082563

Scaffold Ga0209736_1082563


Overview

Basic Information
Taxon OID3300027660 Open in IMG/M
Scaffold IDGa0209736_1082563 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005268Metagenome / Metatranscriptome406Y
F025325Metagenome / Metatranscriptome202Y
F072127Metagenome / Metatranscriptome121Y
F089492Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209736_10825631F089492N/AMTLKNAALLALIGTILVTALLVWTFVFNVVNVLRGLVPALT
Ga0209736_10825632F025325AGGAGGMLSDGPKRPEKTWEELTTAASLETDPEKLGTILEEILAALEERQRTQYGGAGVAADTR
Ga0209736_10825633F005268GAGGVSGSDEETEQQKLWRALSEAGLVEIRLDEFAERIKDVKRIVAVRLRELLDFNTGIKERESAAYSLGTLKGLELKVLANAQKPPDPSEM
Ga0209736_10825634F072127N/ADGRVIPEHRISGGPQPQAWRKINEVTDSEREECEERLLSMARSGMDPRQREQSFWAELNQYLAYTYLRFKPADSKVVEIKRGLEP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.