NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208565_1003645

Scaffold Ga0208565_1003645


Overview

Basic Information
Taxon OID3300027662 Open in IMG/M
Scaffold IDGa0208565_1003645 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7584
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015630Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0208565_10036457F015630AGAAGGMASGHTKGFWRRARNGPLSQDQVMAVDVQLEDHIREIEGLVGGYLRSPQDQATRQALVAELDKLDDQTDRADAYGNFRSVLVRYQVPRSWVIGATSDTSTAEDVPGAEFKAQVALVKAARNAIRDTTAEAQSALQRANDELAEVRRHEDGG
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