NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209282_1145369

Scaffold Ga0209282_1145369


Overview

Basic Information
Taxon OID3300027666 Open in IMG/M
Scaffold IDGa0209282_1145369 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001430Metagenome696Y
F038571Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209282_11453691F038571N/AMLKIKILPITFKIVSDECAENKVLPITFEIVTDECAENKVLPITFEIVTDEYAENKNLADYF
Ga0209282_11453692F001430N/AMLKIKILPITFEIVTDECVKNKVLLITFEIVTDECVENKNLADYF
Ga0209282_11453693F001430N/AMLKIKILSITFEIVTDEYAEKKILPITFKLVTDKYAENKNLADYF
Ga0209282_11453694F001430N/AMLKIKILPTTFEIVTNECAENKVLLISFEIVTDEYVENKNVVDYF
Ga0209282_11453695F038571N/AVLKIKILSITFEIVTDECAEIKVLPITFEIVTDECAENKVLPITFEIVTDKYAENKNLADYF
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