NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209282_1158803

Scaffold Ga0209282_1158803


Overview

Basic Information
Taxon OID3300027666 Open in IMG/M
Scaffold IDGa0209282_1158803 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001430Metagenome696Y
F038571Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209282_11588032F038571N/ALPITFEIVTDECAENKLMPITFEIVTDECAENKVLPITFEIVTDESAENKNLADCF
Ga0209282_11588033F001430N/AMQKIKILPITFEIVTDEFAENKVLPLTFKIVTDKYAENKNLADYF
Ga0209282_11588035F038571N/ALPITFEIVTDECAENKVLPITFEIVTDECAENNVLPITFEIITDEYAENKNLAD
Ga0209282_11588036F038571N/AMLKIKILSITFEIVTDECAENKVLPITFEIVTDECAESKVLPITFEIVTDESAENKNLADYF
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