NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209282_1236413

Scaffold Ga0209282_1236413


Overview

Basic Information
Taxon OID3300027666 Open in IMG/M
Scaffold IDGa0209282_1236413 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001430Metagenome696Y
F038571Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209282_12364131F038571N/ATFEIVTDECAENKVLLITFEIVTEESAKNKVLPITFEIVTDEYAENKNLADYF
Ga0209282_12364132F001430N/AMLKIKILPITFEIVTDECAENKVVPITFKIVTDKYAKNKNLADYF
Ga0209282_12364133F001430N/AMLKIKILPITFEIVTDESAENKILSITFEIGTDECVEIKSCRLLLK
Ga0209282_12364135F001430N/AMLKIKILSITFEIVTDKYVENKVLPITFKIVTDKYAENKNLADYF
Ga0209282_12364136F001430N/AMLKIKILPITFEIVTDECAENKVLPITFEIVTDECAENKVL
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