NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209282_1245183

Scaffold Ga0209282_1245183


Overview

Basic Information
Taxon OID3300027666 Open in IMG/M
Scaffold IDGa0209282_1245183 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001430Metagenome696Y
F038571Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209282_12451831F001430N/APITFEIVTDECAENKVLPITFKIVTDKYAENKNLGDYF
Ga0209282_12451832F001430N/AMLKIKILAITFEIVADECAENKVMPLTFKIVTDKYAENKNLADYF
Ga0209282_12451833F001430N/AMLKIKILPTTFEIVTNECAENKVLLISFEIVTDEYVENKNLADYF
Ga0209282_12451834F038571N/AVLKIKILSITFEIVTDECAEIKVLPITFEIVTDECAENKVLPITFEIVTAEYAENKNLADYF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.