NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209009_1000004

Scaffold Ga0209009_1000004


Overview

Basic Information
Taxon OID3300027667 Open in IMG/M
Scaffold IDGa0209009_1000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)164700
Total Scaffold Genes182 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (60.99%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004945Metagenome / Metatranscriptome418Y
F008403Metagenome334Y
F043158Metagenome157Y
F045957Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209009_1000004119F043158AGGAMDARDAWRTTLPAFAAVVIITVFVLLSISGYLILSAS
Ga0209009_100000414F008403GAGGMLEINELRRRIAKLKFERASVTIIEELEAQLRILRSIYDSATALFAAGETDSRLQASFRDRQLGTWTFENVYFYVYEQAVALEPDGHDLATLIWHYDYTAPLLNSVAAK
Ga0209009_100000431F004945N/AMTLVDWAVIILGGWTVAMIGAGLIMALRPGEGALEYDAPTVEPLVLRQTAGVMPSRAWGFRPAVHHSRYDPAPWQVQPPRSDDESLDNVDRATDIKRDLGSEHPPWERLDRQGL
Ga0209009_100000478F045957GGAVPVTERELLAAAAQAAGLRLTAQDVADLLPAWKRYLGLVEQLRAAMPPEDWDDRG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.