NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209009_1000023

Scaffold Ga0209009_1000023


Overview

Basic Information
Taxon OID3300027667 Open in IMG/M
Scaffold IDGa0209009_1000023 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76969
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (60.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010006Metagenome / Metatranscriptome310Y
F019974Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0209009_100002312F019974AGGAMDASEKFEALVPKPLDADAIERRRELEDIHEELLLSILALEEEWQLDNRIAFSLRQREAA
Ga0209009_10000234F010006AGGAGGMANASDPINQAKDELERHVVDPISHVPRLVLSRHVSGERLLDRVADVVNQLIGSMYLFVLITIGIVAWLFAGNIVGFDKTPWPLLLTILNLPQLSIMISLQVSANRALAAGDARAIADHETLHAIHELAKMQIQILDGQNKVLDGQNQVLELLKLAHPAPAT
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