NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209009_1000134

Scaffold Ga0209009_1000134


Overview

Basic Information
Taxon OID3300027667 Open in IMG/M
Scaffold IDGa0209009_1000134 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30623
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018414Metagenome / Metatranscriptome235Y
F047202Metagenome / Metatranscriptome150Y
F055902Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209009_100013413F018414AGGAGMCLSLNEAEMSSIVEAGGGKYVGVLKEIPGRMELIVLFISPQTRSTLGIPMSRLTVEAVREQLAESNVAFAEASADDK
Ga0209009_100013420F055902AGGAGMKVANKSIVRNKVTAAAALLAGLAAISPNAGAKHRASPSTSEPASVIAHLPLPGITVHQLELQQNGNKQYLYIEEFSKNGFAIVDVTKPGQPDVIKSEAWPNDASAGKLQLVSGRLALAEAPDTRTETVLRTETLKVLDLSDPANPRTILTFAGVTSTLADDVHNLVYITNSDGLWILKHQPDQALSSVIRPCSSEDASNELASCH
Ga0209009_100013422F047202GGAVKDLKQRSEQHIDTAPAIDLGDTEISSIVSAGGGKYVGVLKEIPNKMESVVLFNSPRTRTTLGIRISSLTVDAVRKHLAESDAAFAEAGAK
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