NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208981_1003302

Scaffold Ga0208981_1003302


Overview

Basic Information
Taxon OID3300027669 Open in IMG/M
Scaffold IDGa0208981_1003302 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3891
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005577Metagenome / Metatranscriptome396Y
F058850Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208981_10033022F058850GGAGGMDAGRDFERMQDYVVGRLSEDEHRAFEDRLVRDPALVHELEQSLRLSEGLHQLRAQGYFDKAASRARGSRIWLPILAAAAIAGLALFLWLQPRNRPSPVLTASLESRTAGVTPSVAAHFTFVAVRESSTPDLELPSGGVIEFRAAPATHLTASRYRMTLVQQDEGESSKPVGAAAGLALGADGYVHGYADASRLEPGRYLLRIEPDAETPGTAEVFPFNLRARGARPTP
Ga0208981_10033023F005577GAGMSRVNVAVAVADDARGRIYEIAAACRALGLDHSATLARVGVLTGSMESDDLVKLWAVPGVLAIEVERGFRWGTTGRTH
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