Scaffold Ga0209588

Basic Information
Taxon OID	3300027671 Open in IMG/M
Scaffold ID	Ga0209588_1000049 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209588_1000049 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46211
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (76.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

46211

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (76.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009059	Metagenome / Metatranscriptome	323	Y
F017615	Metagenome	239	Y
F072227	Metagenome	121	N
F091694	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_100004916	F072227	AGGA	MKIISICWAFFGGLTLFQIAAGGLFLPVAQQIGSVADSLLFVLIAFALREPTILGRIVTSGETVSQAVYANPSLDTIVLYNTESDRRSLVETFVKDGLATGQDVVFQVAKAEVPFYRAILKASALTDTFLGEHSVTIQPIEGTAAPREINGSLPASVPRERRELIDLDEMDKDRCRNIIDQITIPDSTPRPKHAGRIWALNVDGAHPGVLDLLQQANPTARVIDLAMQQDTFSSMVNMKHPDILGNRLLLEYEPTSDYEEIVKKFVREFQANVESVAIFTSAGSPIYRQFRDQRNISLFSFSTKTSSPARLSEEQVLLPERDTSLLLDAVDKLLQALSKKRIGIVFDVFTDIILSQGFEKAYGVLSSIVEMTESEIASILVLINYGALEPRVLGAIRGLFRSQLRFNFEGLKTIKLQGSRLERSFEDEPLSGVHESSGGIRA
Ga0209588_10000492	F009059	GAG	MERIVEVFEARFGDPYLDPTAELTFEELTAAFPGVPVAELEEGLLHWTSHSGERTLSTKTIENDGYETRVWYIHGLARHRIDPSSSSSRHVALG
Ga0209588_100004939	F091694	AGG	MPRLPTTRIGVKRIVIEVNRDLTVEQFEILDDALKRAGLVKETKVTFHNHEPRKPRTPRVSHPTWRIGHESQSGSLSAH
Ga0209588_100004943	F017615	GGA	MPITDVDYACREARMDLWTKLAFLTGLLLTVGPLVIRMYDLIDNATTLPFFVIGVILVVIGERNRVRLEENRFSTH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209588_1000049

Overview

Ecosystem & Geography

Associated Families

Sequences