Scaffold Ga0209588

Basic Information
Taxon OID	3300027671 Open in IMG/M
Scaffold ID	Ga0209588_1000114 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209588_1000114 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24063
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24063

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008609	Metagenome / Metatranscriptome	330	Y
F010607	Metagenome / Metatranscriptome	301	N
F015844	Metagenome / Metatranscriptome	251	N
F019111	Metagenome	231	Y
F023559	Metagenome / Metatranscriptome	209	N
F039071	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209588_100011428	F019111	GAG	MERAERDENTLRSQIINQLEESLAMSRQMMTNLKLDPKTRERWTQLHTNTSQVLNTVLRDKQYEDWEKRLKELEAAGHLPRKTAWPTYKPTDNTGRGVTI
Ga0209588_100011429	F039071	AGGA	LVEEVKDGGQRDELLANIQRLSRIVLDRLEEGSKEGTLDQAQIRLLGSIAMKSLGLWQEALNPRPRRGLRRETRESEERLAKETLDKSVQE
Ga0209588_10001145	F008609	AGGA	LLALGIAAYYVTSQTNLIGGRTHTTYPLAGIGLAVLGALIAVGGVMMGQAGSKTTSQFKCDKCGMTFGSQGALDQHSKDKHGMKAA
Ga0209588_10001146	F015844	N/A	MLLDPVSTRPHFREKMTETMYRHAMSVAFKNWHTLALAAVLYAVNVFLLSIGNSMINTSSQSIGGWVVLVISGYLFIGAIYLVSSTLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQSTQTLAAAVTLIVGGAIYLVAILVGVAAAFVRPRK
Ga0209588_10001147	F023559	N/A	MASLKKRIPKPDLSKYDQSPLYMYTEKDSLNRVTVLKETAKDIYLIAGRYSGVEGDARLYTPLTDEEKGEIERNLRGSHKEALINHL
Ga0209588_10001149	F010607	AGAAGG	MVNIDRYRVVARFARLFPDPAVFEDQDRLVERYLVQSGLPKGKASYLYQPEDEVNPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSPEEHSKLWKKQRIGEMSFQLRDFRHETSGLNLTNVSELYEMMKKQNQTTSLSSIELAKMPEDAFRVTVAYLKSQLRKSAEQEGLEVEVYAARELSASEKTSLEKRLTRESTGSTVYVILSKPSELMKIETR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209588_1000114

Overview

Ecosystem & Geography

Associated Families

Sequences