NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209588_1004833

Scaffold Ga0209588_1004833


Overview

Basic Information
Taxon OID3300027671 Open in IMG/M
Scaffold IDGa0209588_1004833 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3828
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006466Metagenome372Y
F013280Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0209588_10048331F006466N/AMLVIGVITIVGSVGMLLTNRTAILAASGSLLLLIVWGKIAGDIYGLPGPDSALLLLQFMLVIFFMEASATALIFDSTIKQLEGKNDDLSTLARMRVMKWEQVQLLSLGKLALGAFGLSLGLLILGSLVSVSVNQIAFSGVLVLAAVIAIFILLTYRREPEERR
Ga0209588_10048334F013280AGGVSAVAYAVLLVLVRGLFPSESTPTISLTGIPLVVIIVLIARDLARKSTSPTISKAAPTTSGFKGNPVQFLSGQFRVAAAASNSYFESVVRARLRELLTAKVALETGLEMEKARQLLSDPRRGPGLLEDETLYRMLYGPAPRGGLARMNMISAAIDLIGAWTV
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