NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209383_1005121

Scaffold Ga0209383_1005121


Overview

Basic Information
Taxon OID3300027672 Open in IMG/M
Scaffold IDGa0209383_1005121 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6941
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007827Metagenome344Y
F057680Metagenome / Metatranscriptome136Y
F065133Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209383_100512110F007827AGGMKLTNKQKRSIKRQVDLDLGTSVPVTRVFVSKKIYTRKKKHKK
Ga0209383_100512119F057680AGAAGMTKLIDKIKPEVLRALDRHCKQDYPTSHRMIIASFKDLYNYRELTIEQLSQLKTFLPKEFEPVTSLDWCYGDNILQKKYQI
Ga0209383_10051217F065133N/AMKKITRCALALSILFSSCSKEPSWARNYGQPVYADNPTDIQSGGNIMWHEGMSDAECIRKIKGFDSYDPSKPIFLSPILYDLSQVEDDKSPSSLDADYMLFPHAINSMSDVWGWDYIDELKELYRENGDEGVQMFLDKYLDGDSTLGMKLKPLTWLN
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