NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000006

Scaffold Ga0209118_1000006


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000006 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)255193
Total Scaffold Genes236 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)186 (78.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F000173Metagenome / Metatranscriptome1777Y
F001983Metagenome / Metatranscriptome608Y
F009172Metagenome / Metatranscriptome322Y
F010962Metagenome / Metatranscriptome297Y
F021504Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_1000006155F000043AGGMLYQLGWATLPGLRGLSVSEFRATPTVNPDNERGVAVEYASERDRDEFLRHLEQHFAARRFTNAADAFDTVKAFVVERAAKR
Ga0209118_100000616F010962AGGGGGMARCPVCEHDVATPFFLNVDRWRWLACPNCAARLERKNPRFVVALMPLWVALIAAGGQGHRFTVIAEVLMVGIFVVILVEFMHPRLQLRKLPPKPEIRLDINGSSN
Ga0209118_10000062F000173GGAGGMKTFEVQFRYRDRNEGTAESTVKVEASSLPGAVGKATRQFVKGLDRKQRFDMNKNGLEITAKSISTTTEAQASAEAAAS
Ga0209118_10000063F001983AGGAMTRKNTWARLVVAVVLSLPLTACKDTKTLQENEQLKAQVAELQKENGQLGNDLETMTAARDTLTKENEALKAESKARKTKHSGTKAASRKRRRN
Ga0209118_100000636F009172GAGMAEDNKKSTEKPAAPGTRKPYTKPNATSEPIYETLALACGKLPGQGGLCNAAPRRS
Ga0209118_100000637F021504GGAGGMGRIRLAVLIFASLGLLLCVSQEAAAQSSNRLGKRNEERGDSTSDARLRPRRPQPRPRGPEIFYCETPDTSCRTTQDTFAIADLRDLFVFVVWPGVSGQHVQTVEFLLPGGSIYSSKKTRFSIGGASRVAAMAPAFKNEVSPVPPAPHLIAEANKVHPEGIPTLLMKSRGDSSVLTVLPVGGTYITQRNLSGTWRVRVLLDDRFALESEFTLVPREPPPAAKAEEKAER
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