NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000099

Scaffold Ga0209118_1000099


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000099 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61314
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (45.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002096Metagenome / Metatranscriptome594Y
F004501Metagenome435Y
F045668Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100009948F004501GAGGVGGRLIEPRDVVLAMLGSSAALAGFVLVFLGVIIASYQSYAGSVPAQVVSPYRRTGAVLFGTFGYSLITVALCLTWLALGGPSALYGWTIGLFLVQLVAVFLAAGWATRMVLWQ
Ga0209118_100009949F045668N/AMALTQKKLQDLKDAGLIGLLHDDEKLWNTKARHAYSATRAYIKEIRPDDPIALLVAELEVTPEFRNYLAKKKLKQKYWSEWFAELIVDHFWTELTGG
Ga0209118_100009969F002096N/AMHFFICWFFHQKEREVLLKGILPGGIDAVVFCWRCDRMRGRAVRVLQMTPNGIRA
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