NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000238

Scaffold Ga0209118_1000238


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000238 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34656
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (71.79%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014779Metagenome / Metatranscriptome260Y
F021353Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_100023810F014779AGGMDNARMQECTICGEERSAGQVWFLVAESHWEDKLKVLEWQDELAKRQGIYAACSGGHVEELVVHWMTTGSLDYPFATVGPKPGRHKQRLGWILPTIEEPDTRNARLIGELAVDRESVRRALREDPDSLQVILDELLNALQREATGTTARFESADAMCYGFPREI
Ga0209118_100023814F021353AGGMSGDNSSTNLNPGIHSPHTLYRGLYVRIARKLGVDPSYVSRVARGDRRSSQVESALRRALEEINRQLERSSSGPESKLSRPASAAKRFTILLKQNRSRIRKQWLAHSQADPNLKRVKIPARKRTAPIVPLIEEAMKVMKLNVKDMTTAPMKAAQQHGRLRQAQGFTAMALVEEYNLVRRCVFGLAQEHFQQMDPHLLIQDLTQFGEALDLQTQRALRDYLATA
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