NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209118_1000297

Scaffold Ga0209118_1000297


Overview

Basic Information
Taxon OID3300027674 Open in IMG/M
Scaffold IDGa0209118_1000297 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29529
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001069Metagenome / Metatranscriptome787Y
F023146Metagenome / Metatranscriptome211Y
F039731Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209118_10002971F023146N/ATDPRWQVYDFAASAGETILKGVSTDNHFFAVRTVGKNGARSIAVPTEIERRPPPLPSSSK
Ga0209118_100029711F039731AGGAGMRRKVLAWTLFLGSLLLLSLAATPYSRAADAALISARLTLVIVLSILVVRERWRKRHELPGKGAPSHPDVGDRFLQRCLRWSHGEEKKPVSSGRSV
Ga0209118_100029729F001069GGAGMQYMPGFTVQCINPQCEARGQWMRADITAPTANDGHCPCCGDYLRNVPPPLGPRFRMRPRPLTARPRPR
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