NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209011_1000016

Scaffold Ga0209011_1000016


Overview

Basic Information
Taxon OID3300027678 Open in IMG/M
Scaffold IDGa0209011_1000016 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144087
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (86.05%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000417Metagenome / Metatranscriptome1165Y
F028599Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0209011_100001637F028599GAGGMLASTLIYFNKNQEEVARVTFDENDVPGWCIKSKGEPSFKRKFAAQREACAVWLREFDPETGKLRSKTQMKELSNTH
Ga0209011_100001678F000417AGGAMNRYLTLSLAISMTLSTLAIPLRAANEPRAGMEIQNTVWTNDDLERLHVPGLICIVGRMNEETSKSASLPRPYVRNQDAAWYAEQAAKLREELERRRAQLGEYREALEDARSLRETTGGINLDEGDIGITPQAGIEILQRRVREAQVGLDALEDLARRHDIPPGTLRGQ
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