NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209011_1001391

Scaffold Ga0209011_1001391


Overview

Basic Information
Taxon OID3300027678 Open in IMG/M
Scaffold IDGa0209011_1001391 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8779
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003392Metagenome / Metatranscriptome489Y
F052816Metagenome / Metatranscriptome142Y
F062122Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209011_10013911F052816N/AFVARVQRGSHIILEQTCVGDAVWVPKRLEVRASARILFLKSLNIDRILTYSDYRPGADGPYSVSR
Ga0209011_10013915F003392AGGMNEYDFGSRDRAQKPKGYGNFDEKIQYLLGVEEQLLQSISARAPLPEVLNGICSALDRQIGNVVSLISLPGDDASELAAIAMNAAIFGLHTFCSEGLVAENDELLGSLEMYCSVPRSPSAREFQLIERGKCLAAIAIKRHNEAGH
Ga0209011_10013916F062122AGGMNLLFRSLNSLFPPRLPRFGFEDASGTAEYYNRLARHDEVTMNPPGLWTGRISTQLVARIQPLKTAGKVPQMILRHAA
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