NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209769_1000415

Scaffold Ga0209769_1000415


Overview

Basic Information
Taxon OID3300027679 Open in IMG/M
Scaffold IDGa0209769_1000415 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16974
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059770Metagenome / Metatranscriptome133Y
F098903Metagenome / Metatranscriptome103N
F104718Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209769_100041513F104718GGTGGMSEPMQKEIDAVVALMAPPPNSTGLLTARDVQDIVRRAASKGALIGWLAAEKDVHARMSRTLGQLEYENQCNKDRVKELELEVMGLQQ
Ga0209769_100041525F059770N/ADELKQMRPYIESWGKQLGCSRVSLAGRQGWQKTFLKDEGYEPKWFILSKELS
Ga0209769_10004154F098903AGGAMVTKKRGLVVKVEQPSFPTDPFKVKLNSLLLSVSNRNKDHTAVWGTDRLINLVDAELRTKFWNQMERVWLAQENRDEERLEKAVKGMIAGYDALERYAVANGIDPMPDIAAIEHEMTDGSVMVIVKTKADALLYSQFRPEVQGQHIWNMEEIETMMAGAVMREVIKIKQLDAGATMVKVGGDSGFDDMESDLDFSKPSTLPKKFNTELAEAGRNASI
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