NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209769_1053373

Scaffold Ga0209769_1053373


Overview

Basic Information
Taxon OID3300027679 Open in IMG/M
Scaffold IDGa0209769_1053373 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1357
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F009883Metagenome / Metatranscriptome311Y
F038208Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209769_10533731F009883N/AAVPRIGSNKMNEVSIVIAMVIAGALWAVMAYSVGFKEGERQGYTRGRAVARHAVSADRKV
Ga0209769_10533733F000403N/AMETAIMSDYMEIIFPQKMIARLMCNGEIVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQENIIWFCGDCR
Ga0209769_10533734F038208N/AMIDRIEEVQCMIAAIQHCHDRSADHSSRIVKDISWFAYVAQMAESMAAEYVVAKHLGYDYTPGITWDKSKADVGDHIEVKWSANPVSNLWIQESDRHDRDIAVLVTGSSPK
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