NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208991_1024827

Scaffold Ga0208991_1024827


Overview

Basic Information
Taxon OID3300027681 Open in IMG/M
Scaffold IDGa0208991_1024827 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1811
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004349Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0208991_10248273F004349AGGAVKTHTGLVVAISALVVAGCTNPAAGPAKPPTAQEILAKPDTANVKDGHFTLVAHIVSGSVAFDATGDGIIVVKPQQASRFTMQTTIAGQPLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYLGEETLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDVQQT
Ga0208991_10248274F004003N/AMVSVGLLAACGGPGAPLGPPSAKDILSKPLHANLKDAHFLVAGKFVSPSPGGVAVDVKGDGALVYKSPGAGRFKFETMVAGQKVSYQDISINGIDYTFVVPGNGKWTKTAGSGLGPDSFTGASDFKYVGEENLPTGKSWHAKAKDKDGNQFDGWIRESDGYPAKYEITQQGNALTLNFDK
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Institute for Fundamental Biomedical Research
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