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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027681 Open in IMG/M |
| Scaffold ID | Ga0208991_1025536 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1786 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | El Dorado National Forest, Georgetown, California, USA | |||||||
| Coordinates | Lat. (o) | 38.88 | Long. (o) | -120.64 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004003 | Metagenome | 457 | Y |
| F004349 | Metagenome / Metatranscriptome | 442 | Y |
| F061378 | Metagenome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208991_10255361 | F061378 | N/A | MVAALTAACGVPTPLAPPSAKEVLARPQQSSLTDAHFKVTGKIADNNATIDIVGDGALVYKPKLAGRFQFTTNVSGQTTTIKEISVGGVNYGLTPASPKWVASPSASGIDPNAFAGKSDQKYVGEETLPQGKAWHATAKDK |
| Ga0208991_10255362 | F004003 | N/A | MRVAAAMAAVGIVAACAGPGAPLGPPTAKDILSKPLHAGLKDAHFVVTGKFVNPTPGGTPLDVHGDGALVYKSPVAGRLKVETTVTGTNVSYQDISINGVDYTFIAPGNGKWTAKKTSSGLGPDSFTGTSNFTYVGEESLTNGKAWHAKAKDTDGNQFDGWIRESDGYPLKYAFTQQGNALTLSFDKYNSGETITAPPASQVVQG |
| Ga0208991_10255363 | F004349 | N/A | RRASPRATWPWTTPTSSEGPASGGRISAVKTRTWILLPIVALVFAACGNSTAAPAKPPTAQEILAKPDTANVKDGHFSLVAHIVTGNITFDATGDGIVVVKPQQASRFTMLTTIAGQSLKFETIIIGGKEYDLSPDNPRWTVKPSTSSSNPSSFKGTEAAYLGEETLAQGKAWHVKAKDDSGNPFEAWIRESDGYPLKYASTMQGTTFTATFDRFNTGQTVSAPPASDIQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |