NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208991_1030237

Scaffold Ga0208991_1030237


Overview

Basic Information
Taxon OID3300027681 Open in IMG/M
Scaffold IDGa0208991_1030237 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F006313Metagenome / Metatranscriptome376Y
F032374Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0208991_10302371F006313GGAMATAQIKAGQIVVPDGMVGVYRVVRVSPDGQTADIEKFDVSKQKSLGDPMRSVAMNKLTVYKEDASQTAARIVREAITED
Ga0208991_10302372F000281AGGMQNPVKERIAKLREEIAQISEANRLYLHGRKRNMPGAVGEHERRLQRLQEILDELMALTDWKKP
Ga0208991_10302373F032374AGCAGGMGFQEMGTLRCDGCGEEFFIGHNPKSVDKWVAEKQAKWLEKVLAEEHERDKKHSDRIELP
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