NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209071_1038113

Scaffold Ga0209071_1038113


Overview

Basic Information
Taxon OID3300027686 Open in IMG/M
Scaffold IDGa0209071_1038113 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1488
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046634Metagenome151Y
F080521Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209071_10381131F046634AGGAGMSTQPSFIPYTESKSAEERAEYVKANPHKYMPKAQYDLFTSLNNKIDGLDSKMNDILA
Ga0209071_10381133F080521AGGAGMNINAMYNDSIKAMSDYKDKVIDKYNSTSMSPFPKNVNVTVKFDLVGTYSDLLKKFDSMSDKDMQRVVDILEKKSDIIQKIIMKQLDK

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