NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209071_1057436

Scaffold Ga0209071_1057436


Overview

Basic Information
Taxon OID3300027686 Open in IMG/M
Scaffold IDGa0209071_1057436 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1173
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013822Metagenome268Y
F070575Metagenome123N
F077807Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209071_10574363F013822GGAGMTTEKEILRKNVKELQIQLRDAHIRIKELNLTLNTLRNRLGSETEFTTADGWAMPVENPDAKHIKENKDE
Ga0209071_10574364F077807AGGAMSKTGFTDWLHKEIKLQQQQRKIIMAKNLKEQQHGAVIIDQEQKKLILDLFNAGREFNEDYRESGIKYMRVWTIEQFTDLIDDMKDAFGIVPKKSSEKDFNGEIGSPMFWTDHVYSNDPRAWTRKD
Ga0209071_10574365F070575AGGAMGKNLWDKEFNRVYRETLREYIEEGYDLAEAKSLARKDAKEIMQDQLDFVEELYDN
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