NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000230

Scaffold Ga0209710_1000230


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000230 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61489
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (79.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025997Metagenome / Metatranscriptome199Y
F043378Metagenome / Metatranscriptome156Y
F093837Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100023015F093837N/AMDIETLDTAYQGDKDFFWLCYNGRIPDYWISKDKYADYNKFLDLFDNPPKSHVDYGGAIIQYNDDDFSYPYNVDQQGIYLEWIKTSIEKFQFKNVKFKKCWWLTYPENAFSGLHTHEDRGQRIMTCVMFLNTISVSTLTPLNGKLKAITMNPVTGELVSDMIKCIAGDVVVMDGKVYHGVYPTLEERKVFVVDFTYDVELN
Ga0209710_100023023F043378GGAGMNKLLTNLFTKGANNTIHLPDRSSFSYRGSWIGVQYNTVVDQFHLGEYSSAVYQITVEFDSNEKEIMQLSVVARPDRAVATIFGRSSINQELVNLSVTVDASVCKINASPTSNIYAGAKLIFHATYAKTIHQLTPPAIVADVSSVEESGVNTFDATTTYFDNTNITFDKV
Ga0209710_100023025F025997AGGMATVINDKFQAQNGFESPNFTVDTAGKLTTPVIDVQSILLNGTPFVAYVPAADDAGDDTGTQVSNSFDSLAVTGGVFKVNYLNNTALSVINGTLTINSIGATPGSIDNVEIGYNTPSQIKVHTIDMASNPDSSASSINMNGASINGDVSIVNNVVLNNQPTVGTHATSKSYVDATATALAVAFGA
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