NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1001521

Scaffold Ga0209710_1001521


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1001521 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17557
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008783Metagenome / Metatranscriptome328Y
F012360Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100152123F012360N/AMLKDEYKKIIDDKPWQEMEDHFDGLPVADVTQITQLDINTEEWIKFTVDNFELAQQNWEIPKLHYPESAKKFARINNAVGRNKHNTFELNYGINGDSNEKLKKLLGTDNIEKLNADPSSVLVRLLVKMPGHGVAWHYDGNGTYKKKFPNVDHSKLKRLWFSIQDWQDGHVFQISKTVLSHWKKGDVYQIPFGVGHASGNFGYKPQYTVSFTAVIND
Ga0209710_10015216F008783AGGAMATVQPRHERNDPNAGMQGAYYTVDVAMTNFDDTEDQFGGRMSPCAANDFTTKPTTKAQSLLVSRGQLRYKLMLNALQVRSNCRIINMVTTYAADAGDSPITDINFGIVFENDDFVPTTGTTIDGSTSTTTKVLYIQDKIAEALNTTHTEKMSVFNPSSNVGQIADEEVTVGPVLNASIGEIVEAITVAEVAGFRSNVDAETPTDEALTYSAE
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