NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1004747

Scaffold Ga0209710_1004747


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1004747 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8737
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015097Metagenome257Y
F027052Metagenome / Metatranscriptome196N
F028037Metagenome193N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10047472F028037AGGMPCYRISYTRLDMPSTCGSIKTAHSEEEAIKCLTTGSKTKGYKLRKTNVPITITQIKEI
Ga0209710_10047473F027052N/AMITDLDEVRQYADTMLEALDVMGRAMYFCLNHPNASAFKAHRKLLIGAHERMGKDTTHFLSQIDEPDLPYDPTEEELSQHG
Ga0209710_10047478F015097N/AMNYTYMLNMDNDKAESCDVIVKFITNDSLEFDGFTSIVSEPPLYSDDLAYLEEWVIQGREQWEPMGTFSHTNRERM
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