NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209710_1007744

Scaffold Ga0209710_1007744


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1007744 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6398
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F039832Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100774415F002182AGGAMIYTDQENEWLSTPKKNRRVSNQTADGSAPKTQDWRKHDWAITTTIEIDGVSYVMPVQV
Ga0209710_10077448F039832GAGMERKIIILLTLILIVIGVTGCAKPKINTVPTEMDTIGNLEAISTVLGCMFNPAPCQDKKELAKTEDK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.