NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1047970

Scaffold Ga0209710_1047970


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1047970 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1953
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016690Metagenome245Y
F037936Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10479702F037936AGGAGMIGNKIRQGKIWCKSTVKNRFGSGYTHKKLKSNWIQMVRDHDEPLEVYVSRKNEIEAKMFKEHLRNGRLQESNVGQSDIEDIWNEIEQL
Ga0209710_10479703F016690GGAGMSKLDGVLIFLTGIPVTLMAWITMGEAEGYYMSDAINEGFPMGIAFIALIGAMGLTLLMTGLFIIHINRNN

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