NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1115975

Scaffold Ga0209710_1115975


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1115975 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F033113Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_11159751F033113AGGAGMNTKNQRQIVLFFQGIDGIKRHEWTHGTLYLKLEDDRDCDFIHTEIRKFYKGYINPEGGVNMYAVGDEFAFDFVPEDREAPVFTDEKEKGVWSEFAEEELLNNIDDEDESPAFPSYNEIPDEVDVMLNLQDEQKRGK
Ga0209710_11159752F000302GGAGGMTAQTISQDTKERIRELEGQKIMLEDRLEHLGYSGNLVKMHEIEEEIFEIQDTILKLTA

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