NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209553_1000617

Scaffold Ga0209553_1000617


Overview

Basic Information
Taxon OID3300027688 Open in IMG/M
Scaffold IDGa0209553_1000617 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18422
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006099Metagenome381Y
F072280Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209553_100061717F072280N/ALYKIEEDHRSSLYYAQYEWCITINISEAPCLRYLDSKKFEQALRNAKHWSEQDRFGENFRAWGPTKETALRETRDVLLTETEQLKTVVSFRVVSIYTNHLGLADRLINLGNDGVRLRLVRRALMDKPAGVVQLRESQYAYRTYLRERKYTKDQRDMLANFLHSRQDTLRVSPALASWANGTFIGYIRNLSYSRSYYFVDHDHPNEGTMLSLVMPGIVRKTMPIETTK
Ga0209553_10006172F006099AGGVSTVAQSLKENMTSARILYLARYRVPHAIMSLQPEFANNLIGIDRTCIASPVPQEELWPVFEKYGIDTAKLDYAPDSEIYKIYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKPYEPIKNGVLNFQVLENERHSWGYYESIKNALGFDRLTPHCFISENVPVLKQDFNDLVKFLEEKHQKKWLDAMIDSCPPEATVPPWGNGELIRWFSEYEFIGNWIMSRRPITQEFQRRYHYDDMEKIGDFDPNYHTAVCDAVPDLSRSLQMDWGKKEVVNFNYYMDKIRDTLACLS
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