NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209553_1105140

Scaffold Ga0209553_1105140


Overview

Basic Information
Taxon OID3300027688 Open in IMG/M
Scaffold IDGa0209553_1105140 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1013
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045757Metagenome / Metatranscriptome152N
F082697Metagenome / Metatranscriptome113N
F099291Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209553_11051401F099291N/AMLLIVLLICSYSFAQSNITMELKDAPVRTSLEMIFKQAGIKSYVIENSVYGVISMNLSDQPFENSLKLVMRANTVPLTYTKENDVYIVKARVSTEYKQSTPEITVVQPRGLMFEKIFLNHIDPFDLQSVLG
Ga0209553_11051402F045757AGGAMRNILVVVNLLGFFSGIFFGLQTDEKKKDPVYTVISTKYVLTSTIVDDFFRAAKITTYSYNKEEINKIKIPKFQIWEKNFDDTKYLLEKFLNVQFDTDEKKTYYMVKKK
Ga0209553_11051403F082697N/AMNYEDLDPNEQIVLQKQLEEHRKQILSMEVDEILERLVKMHDSTDVIIEGYDLVANINEGHGIAVAGLIRLRTALMDSVE
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