NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209551_1002660

Scaffold Ga0209551_1002660


Overview

Basic Information
Taxon OID3300027689 Open in IMG/M
Scaffold IDGa0209551_1002660 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6665
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F008305Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0209551_100266016F000263GGAMETDTTKLPPHLQKMIDAGVSGTDILHGELKNLMLIAEQDLANALEQEELSEEAMDSMVRTECEGRLDAFAEVYQLTYQLAFAISERTKARESR
Ga0209551_100266018F001460AGAAGGMLGYTLDDLNRMTNAVHDAKLFYLKYPSDLLDKSELVNDLQDTVSFLQGLWAEGYFDNGD
Ga0209551_100266019F008305GAGGMLGYTYEDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVKC
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