NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209530_1035665

Scaffold Ga0209530_1035665


Overview

Basic Information
Taxon OID3300027692 Open in IMG/M
Scaffold IDGa0209530_1035665 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007126Metagenome / Metatranscriptome357Y
F012935Metagenome / Metatranscriptome276Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209530_10356651F007126AGGAGMSGVINDLDALTEFRAHLMRFNHDLAENFATMRGHWRELGDVWRDDMYRLFGEALDEVTPGI
Ga0209530_10356652F037832GGAGMTTQERIVEPVMAPSPTPPSVSPYLSLRQVVRPAIFAHFLLAEDQERAGHLAAECEDLLFLTRELLKAAGLSRLLGAEPAGPASAQEDGGDRQEQLLGAYAEAGLLWAKVVGSTMALAMALLDRGDWGGVRRLASFLADAGEDSTAAELKIQLGKAVWGTYHEQLQGISNAMRPAAIGEAIDALRAVLREVPEDVPDRNREVNRFLAPLAASVHALMREQEMDIPYSSRVEHIAVGGVARYPDIVKLSLDEIAAEFEASASGLVINKQENRHVRGYQRS
Ga0209530_10356653F012935N/ADELDARLADSDGAVRPERFFLIAGLHRWHDLLAEGDYGRPSETSARLVRLADKGPDAGLHVVAWADGYTTAERALRRAGLAHFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSAASLSSFARTAFGSPAFGSPAFGSPA
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