NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209704_1000321

Scaffold Ga0209704_1000321


Overview

Basic Information
Taxon OID3300027693 Open in IMG/M
Scaffold IDGa0209704_1000321 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9315
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024535Metagenome205Y
F033362Metagenome177Y
F037637Metagenome167Y
F105026Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209704_10003212F037637N/AMNWQIKKKRTKQVTVTFEWTEKGDLIAILSDLSALISSGVETYHNQKKSILTADKWHEIEFSQKYVDKIHEEVESDINGELKLVIKSKI
Ga0209704_10003213F105026N/AMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0209704_10003214F024535GGAMAKKKITIDTDNVDVNLEKDGTNIKLDIDTKNVDIHVLKDEVNKEFKLDSKNIDIEISNTAEGLEVKVESKGGIWKLIAKRIVKFIVKRFKVGK
Ga0209704_10003216F033362N/AMKMIPITQFIEIIKKQGAVGVLALWLAYTHFEVQDVKARLYNCLDKNEYYNRKPIEEKQPTLPALKNDTLAVLENKSRKLAKK
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