NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209704_1033155

Scaffold Ga0209704_1033155


Overview

Basic Information
Taxon OID3300027693 Open in IMG/M
Scaffold IDGa0209704_1033155 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1372
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049614Metagenome / Metatranscriptome146N
F074551Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209704_10331552F074551GGAGMSKPLEDQILEQVLVIQALRLRIARMESIYTTPRAIKSTGMNGTSEDTPHKRDTIVDLGPAEARCVTDRDIEKAFYEGEG
Ga0209704_10331553F049614GAGGVINSRMKGKNGELDACRALGKVFPFAWERTAQRYGKGKADIEPCVDWKIHVEVKRRRTGYTYVYSRLAKDTLIISGSMLMCRLSHLRTVMDDSVCLPNVAPRNAGLEDAMLQARTDADSDMLPVVLARQDDEEWLLCWREENDTRLMEEVRTWLDGNTKPI
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