NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1061930

Scaffold Ga0209033_1061930


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1061930 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1310
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F013409Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0209033_10619302F013409N/AMKVILIIIMMNGTVYNLGFNLNHYDARTCDKLFDSVTYSGKTSGKNKHGSFYKSKEIFAYSCTLEKTTKGNNERKNKTG
Ga0209033_10619303F004111AGGMKEKIKQVNDLCAANGSYLNQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYVIMKCIITKSDPEHIVATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSKEEYEELDIPVQPMNGKDTTSNNINYDDSIINELVKKVHYAPHTAKLDFLWRANRELLDQIKIKDLATYNSILNKFNSKRDEITTQNEV
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