NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209446_1000239

Scaffold Ga0209446_1000239


Overview

Basic Information
Taxon OID3300027698 Open in IMG/M
Scaffold IDGa0209446_1000239 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13081
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014771Metagenome260Y
F019704Metagenome228Y
F021893Metagenome217Y
F073304Metagenome120N
F093562Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209446_100023911F019704GGAGGMKRRLKVRELMQREGFRGEIVQLFRSPSTGMIHGYDGYDVTFNEESLVVGLSYGDLSLGLKVSYGIFFATGAKLPSAINVQPAVGVPTETTGNAGSVISTRAGGTGVV
Ga0209446_100023912F093562GAGGMSVRSRLLAEAEKQISNPFLLCALVSQRTRQLMMAGNAIMSTAQLVDSALNELIAGALEFERGKPRRAPLVPAESRSKESHGARESLAIPAISDADLSVEAT
Ga0209446_100023913F073304AGGAMATRSWHSRGFPSWRIWLISRVSRLRNIKNLAPGELPFAGGLVLLLAASMLWRVFPMAVIGAGLVLILQEIADPSPLFLTVPWEALEFVLSGKVRANHFWLHRTQSLLRESRDSLAKIDGCATRGGFFLVGATFNETQIQWASQTAWRAMCQKPSAKEAATGCKTMRFLLALWLIAGGLAALSLFQGVDLGSGLLLCALCGAAGQLLAGPAEKLLSPWAGRVACSNKETWAGRLEVESLAIPRFLWFKRSLVFQVRRTPAQESKEG
Ga0209446_100023914F021893GGAGMPDFYTSQQLAQTLGIAEATIAALQTKGLLQPTVNDGRLFFSSRQAHCLRAALRWARKDKIDLQEAFARVEERWLAHTSATKD
Ga0209446_10002397F014771AGGAGMKARGSITQLIRNRRPGYILDEDGRLVEFDESSLQGLDPQDLIVGDWVEYEELNPIEGRRASRIRRLIQLAEE
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