NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209447_10000011

Scaffold Ga0209447_10000011


Overview

Basic Information
Taxon OID3300027701 Open in IMG/M
Scaffold IDGa0209447_10000011 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50675
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (69.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F012826Metagenome / Metatranscriptome277Y
F073826Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209447_1000001118F073826GAGMGNWYTNVSVKGAQQSDVVALLEELGRRAYVTPETSGWIVVYDQQTDEFDLSILESLALTLSTRLSCTVLASCNADDDVLWLALYENGTLSTRYGSSRKSFEDGDEFPQLKETAEVLAGVFQKPESKRDVLRLLSKSHGILGVLSLYFKVRLAYAVEVHRHLDLANLLGMPRAAVGLGYRYVSSGDTPEGMDREALRRTLVG
Ga0209447_1000001123F000207AGGMKMVLASVLTTILIVAMTLGAMFVLVQATEYVTSLDSPLQRAAAICAELLLGVVLLLGTVWLATHLAVRIFTKKDTSVPGEKFA
Ga0209447_1000001126F012826GGAGLTSVRAHLPAYDWFHSFRNVSVRTGVYVGVFLSIVFGGWVIVANRVPILDPFALVRNFAAVTLLGLIALIPALRFWRMPGNLLTSSLVGWLILSLTYRILCMDFRGLAGRFSAIQIFVLGAVLYLLLVTLSWIGTIIRRARAANESHPNHHLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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